Linux system scan shows 1000s of files/folders as skipped

Hello,  We are on SEP version 14 MP2. Whenever i scan my linux endpoints, the scan result in the SEP Manager shows 1000s of files/folders as skipped on the endpoint.  I am running the scan as root user and we don't have any exceptions configured. How can i get a list of files/folders that were skipped during the scan ?  I am disappointed that the SEP Manager doesn't even show details of directories that were skipped.  Morever, there isn't even any log file generated on the local linux endpoint itself that logs these details .